Examples

Protocol-specific runnable examples live in the repository under examples/:

• Xenium pancreas — manifest input, molecule-label priors and Xenium Ranger import
• ISS — CSV molecule table with a prior workflow
• osm-FISH — image-mask prior workflow
• STARmap — 3D dataset with per-layer polygon output

Each README covers data preparation and baysor run commands. The commands use repository-relative config paths; run from the example directory in a checkout, or download the matching preset and adjust the paths. For your own data, start with Cell segmentation.