Utility function to make reference gene expression profiles
Usage
aggregate_counts(count_mat, annot, normalized = TRUE, verbose = TRUE)
Arguments
- count_mat
matrix/dgCMatrix Gene expression counts
- annot
dataframe Cell annotation with columns "cell" and "group"
- normalized
logical Whether to return normalized expression values
- verbose
logical Verbosity
Value
matrix Reference gene expression levels
Examples
ref_custom = aggregate_counts(count_mat_ref, annot_ref, verbose = FALSE)
