Usage
cnv_heatmap(
segs,
var = "group",
label_group = TRUE,
legend = TRUE,
exclude_gap = TRUE,
genome = "hg38"
)
Arguments
- segs
dataframe Segments to plot. Need columns "seg_start", "seg_end", "cnv_state"
- var
character Column to facet by
- label_group
logical Label the groups
- legend
logical Display the legend
- exclude_gap
logical Whether to mark gap regions
- genome
character Genome build, either 'hg38' or 'hg19'
Value
ggplot Heatmap of CNVs along the genome
Examples
p = cnv_heatmap(segs_example)
