Plot single-cell smoothed expression magnitude heatmap

Usage

plot_sc_tree(
  gtree,
  label_mut = TRUE,
  label_size = 3,
  dot_size = 2,
  branch_width = 0.5,
  tip = TRUE,
  tip_length = 0.5,
  pal_clone = NULL
)

Arguments

gtree: tbl_graph The single-cell phylogeny
label_mut: logical Whether to label mutations
label_size: numeric Size of mutation labels
dot_size: numeric Size of mutation nodes
branch_width: numeric Width of branches in tree
tip: logical Whether to plot tip point
tip_length: numeric Length of the tips
pal_clone: named vector Clone colors

Value

ggplot A single-cell phylogeny with mutation history labeled

Examples

p = plot_sc_tree(phylogeny_example)
#> Warning: Arguments in `...` must be used.
#> ✖ Problematic arguments:
#> • as.Date = as.Date
#> • yscale_mapping = yscale_mapping
#> • hang = hang
#> • size = branch_width
#> ℹ Did you misspell an argument name?
#> Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
#> ℹ Please use the `linewidth` argument instead.
#> ℹ The deprecated feature was likely used in the numbat package.
#>   Please report the issue to the authors.